Other start Up Options

When creating your own game you can decide if there are any random warp gates already.

Why not also have random Infrastructure (Economy, Industry & Science) already in place on unclaimed stars.
You could also have some extra AI players already owning so/all of the unclaimed stars.

Goes some way to answering who built the random warp gates.

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Clearly the Ancients built the gate system, but in our galaxy, the Seed Ships only put them on a handful of systems in preparation for Destiny.